Publications
Publications de l'équipe Fichant
- Soussan Diane, Salze Marine, Ledormand Pierre, Sauvageot Nicolas, Boukerb Amine, Lesouhaitier Olivier, Fichant Gwennaele, Rincé Alain, Quentin Yves, Muller Cécile.
The NagY regulator: A member of the BglG/SacY antiterminator family conserved in Enterococcus faecalis and involved in virulence
Frontiers in Microbiology
2023 Feb doi: 10.3389/fmicb.2022.1070116 - Hajj M+, Langendijk-Genevaux P+, Batista M, Quentin Y, Laurent S, Capeyrou R, Abdel-Razzak Z, Flament D, Chamieh H, Fichant G*, Clouet-d'Orval B*, Bouvier M.
Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase
Biomolecules
2021 Jun 11(7):950. doi: 10.3390/biom11070950. PMID: 34206878 (+ co-first authors, * correspondence) - Tejada-Arranz A, Matos RG, Quentin Y, Bouilloux-Lafont M, Galtier E, Briolat V, Kornobis E, Douché T, Matondo M, Arraiano CM, Raynal B, De Reuse H.
RNase R is associated in a functional complex with the RhpA DEAD-box RNA helicase in Helicobacter pylori
Nucleic Acids Res.
2021 May 49(9):5249-5264. doi: 10.1093/nar/gkab283. PMID: 33893809 - Barriot R, Latour J, Castanié-Cornet MP, Fichant G, Genevaux P.
J-Domain Proteins in Bacteria and Their Viruses
J Mol Biol.
2020 Apr S0022-2836(20)30301-6. doi:10.1016/j.jmb.2020.04.014 - D.K. Phung, C. Etienne, M. Batista, P. Langendijk-Genevaux, Y. Moalic, S. Laurent, S. Liuu, V. Morales, M. Jebbar, G. Fichant, M. Bouvier, D. Flament, B. Clouet-d’Orval.
RNA processing machineries in Archaea: the 5′-3′ exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3′-5′ exoribonucleolytic RNA exosome machinery
Nucleic Acids Research
2020 Feb - Manon Batista1, Petra Langendijk-Genevaux1, Mirna Hajj1,Duy Khanh Phung2, Laura Plassart3, Marie Bouvier1, Gwennaële Fichant1, and Béatrice Clouet-d’Orval1*.
The Archaeal Specific Helicase of the Ski2-like family, ASH-Ski2, is an authentic RNA helicase
2019 Dec en préparation - Weyder M, Prudhomme M, Bergé M, Polard P, Fichant G..
Dynamic Modeling of Streptococcus pneumoniae Competence Provides Regulatory Mechanistic Insights Into Its Tight Temporal Regulation
Front Microbiol
2018 Jul 9:1637. doi:10.3389/fmicb.2018.01637. - Weyder, M. Prudhomme, M. Berge, M, Polard, P. Fichant, G..
Dynamic Modeling of Streptococcus pneumoniae Competence Provides Regulatory Mechanistic Insights Into Its Tight Temporal Regulation.
Frontiers in Microbiology
2018 Jul - Quentin Y, Siguier P, Chandler M, Fichant G..
Single-strand DNA processing: phylogenomics and sequence diversity of a superfamily of potential prokaryotic HuH endonucleases
BMC Genomics
2018 Jun 19(1):475. doi:10.1186/s12864-018-4836-1. - Clouet-d'Orval B*, Batista M, Bouvier M, Quentin Y, Fichant G, Marchfelder A, Maier LK.
Insights into RNA processing pathways and associated-RNA degrading enzymes in Archaea.
FEMS Microbiol Rev.
2018 Apr DOI:10.1093/femsre/fuy016 - El Mortaji L, Aubert S, Galtier E, Schmitt C, Anger K, Redko Y, Quentin Y, De Reuse H..
The Sole DEAD-Box RNA Helicase of the Gastric Pathogen Helicobacter pylori Is Essential for Colonization.
MBio. 2018 Mar 27;9(2). pii: e02071-17.
2018 Mar doi: 10.1128/mBio.02071-17. - Jamet S, Quentin Y, Coudray C, Texier P, Laval F, Daffé M, Fichant G, Cam K..
Evolution of Mycolic Acid Biosynthesis Genes and Their Regulation during Starvation in Mycobacterium tuberculosis.
J Bacteriol. 2015 Dec; 197(24):3797-811.
2015 Dec doi: 10.1128/JB.00433-15. - Clouet-d'Orval B*, Phung DK, Langendijk-Genevaux PS, Quentin Y.
Universal RNA-degrading enzymes in Archaea: Prevalence, activities and functions of β-CASP ribonucleases.
Biochimie
2015 Nov 118:278–285 doi:10.1016/j.biochi.2015.05.021. - 2015 Jan Aït-Bara S, Carpousis AJ, Quentin Y. (2015) RNase E in the γ-Proteobacteria: conservation of intrinsically disordered noncatalytic region and molecular evolution of microdomains. Mol Genet Genomics. 290(3):847-62. doi:10.1007/s00438-014-0959-5. Epub 2014 Nov 29.
- 2014 Jan Johnston, C., Martin, B., Fichant, G., Polard, P. and Claverys, J.P. (2014). Bacterial transformation: distribution, shared mechanisms and divergent control. Nat Rev Microbiol. 12(3):181-96.
- 2013 Jan Mirouze N, Bergé MA, Soulet AL, Mortier-Barrière I, Quentin Y, Fichant G, Granadel C, Noirot-Gros MF, Noirot P, Polard P, Martin B, Claverys JP (2013). Direct involvement of DprA, the transformation-dedicated RecA loader, in the shut-off of pneumococcal competence. Proc Natl Acad Sci U S A. 110(11):E1035-44.
- Phung DK, Rinaldi D, Langendijk-Genevaux PS, Quentin Y, Carpousis AJ, Clouet-d'Orval B*.
Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor.
Nucleic Acids Res.
2013 Jan 41(2):1091-103. - 2013 Jan Sala A, Calderon V, Bordes P, Genevaux P. (2013.) TAC from Mycobacterium tuberculosis: a paradigm for stress-responsive toxin-antitoxin systems controlled by SecB-like chaperones. Cell Stress Chaperones 18(2):129-35.
- 2013 Jan Sala, A., Bordes, P., Fichant, G. and Genevaux, P. (2013). Toxin-antitoxin systems in Mycobacterium tuberculosis. In Prokaryotic Toxin-Antitoxins, Springer, Kenn Gerdes (Ed.), INSB 978-3642-33252-4 ISBN 978-3-642-33253-1 (eBook). DOI 10.1007/978-3-642-33253-1.
- 2013 Jan Llanes C, Pourcel C, Richardot C, Plésiat P, Fichant G, Cavallo JD, Mérens A; GERPA Study Group (2013). Diversity of β-lactam resistance mechanisms in cystic fibrosis isolates of Pseudomonas aeruginosa: a French multicentre study. J Antimicrob Chemother. 68(8):1763-71.
- 2012 Jan Passot, F.M., Calderon, V, Fichant, G, Lane, D and Pasta, F. (2012). Centromere binding and evolution of chromosomal partition systems in the Burkholderiales. J Bacteriol, 194, 3426-36.
- 2012 Jan Ton-Hoang, B., Siguier, P, Quentin, Y, Onillon, S, Marty, B, Fichant, G and Chandler, M. (2012). Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences. Nucleic Acids Res, 40, 3596-3609.
- 2012 Jan de Bentzmann, S., Bernard, C.,S., Giraud, C., Calderon, V., Ewald, F., Plésiat, P., Nguyen, C., Grunwald, D., Attrée, I., Fauvarque, M.O., Jeannot, K. and Bordi, C. (2012). Unique biofilm signature, drug susceptibility and decreased virulence in Drosophila through the Pseudomonas aeruginosa two-component system PprAB. PLos Pathogens, 8(11):e1003052.
- 2012 Jan Larroque*, M., Barriot*, R., Bottin, A., Barre, A., Rougé, P., Dumas,B. and Gaulin E. (2012). The unique architecture and function of cellulose-interacting proteins in oomycetes revealed by genomic and structural analyses. BMC Genomics, 13: 605. (* joint first author).
- 2011 Jan Calderon, V., Barriot, R., Quentin, Y. and Fichant, G. (2011) Crossing Isorthology and Microsynteny to Resolve Multigenic Families Functional Annotation, 440-444. In proceedings of the 2011 22nd International Workshop on Database and Expert System Applications, Ed. F. Morvan, A.M. Tjoa and R.R Wagner, IEEE Computer Society.
- 2011 Jan Bordes, P., Lavatine, L., Phok, K., Barriot, R., Boulanger, A., Castanié-Cornet, M.-P., Déjean, G., Lauber, E., Becker, A., Arlat, M., Gutierrez, C.(2011). Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of σE-dependent activity. J Bacteriol., 193, 246-64
- 2011 Jan De Luca G, Barakat M, Ortet P, Fochesato S, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Maréchal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Méjean V, DuBow MS, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Verméglio A, Achouak W, Heulin T. (2011). The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment. PLoS One. 6(9):e23784. doi: 10.1371/journal.pone.0023784
- 2011 Jan Giraud, C., Bernard, C.S, Calderon, V, Yang, L, Filloux, A, Molin, S, Fichant, G, Bordi, C and de Bentzmann, S. (2011). The PprA-PprB two-component system activates CupE, the first non-archetypal Pseudomonas aeruginosa chaperone-usher pathway system assembling fimbriae. Environ Microbiol, 13, 666-83.
- 2010 Jan Barriot*, R., Breckpot*, J., Thienpont*, B., Brohée*, S., Van Vooren, S., Coessens, B., Tranchevent, L.-C., Van Loo, P., Gewillig, M., Devriendt+, K., Moreau+, Y. (2010). Collaboratively charting the gene-to-phenotype network of human congenital heart defects. Genome Med., 2, 16 (* joint first author, + joint senior author).
- 2010 Jan Brohée, S., Barriot, R., Moreau, Y., André, B. (2010). YTPdb: A wiki database of yeast membrane transporters. Biochim Biophys Acta, 1798, 1908-12.
- 2010 Jan Brohée*, S., Barriot*, R., Moreau, Y. (2010). Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases. Bioinformatics, 26, 2210-11 (* joint first author)
- Clouet-d'Orval, B*, Rinaldi, D, Quentin, Y and Carpousis, A.J. .
Euryarchaeal beta-CASP proteins with homology to bacterial RNase J Have 5'- to 3'-exoribonuclease activity.
J Biol Chem
2010 Jan 285, 17574-17583. - 2010 Jan PE4.08 Passerini, D., Beltramo, C, Coddeville, M, Quentin, Y, Ritzenthaler, P, Daveran-Mingot, M and Le Bourgeois, P. (2010). Genes but not genomes reveal bacterial domestication of lactococcus lactis. PLoS One, 5, e15306.
- 2010 Jan O'Donohue, M., Choesmel, V, Faubladier, M, Fichant, G and Gleizes, P. (2010). Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. J Cell Biol, 190, 853-66.
- 2009 Jan Boyer, F., Fichant, G, Berthod, J, Vandenbrouck, Y and Attree, I. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?. BMC Genomics, 10, 104.
- 2009 Jan Turlan, C., Prudhomme, M, Fichant, G, Martin, B and Gutierrez, C. (2009). SpxA1, a novel transcriptional regulator involved in X-state (competence) development in Streptococcus pneumoniae. Mol Microbiol, 73, 492-506.
- 2009 Jan Aerts, S., Vilain, S., Hu, S., Tranchevent, L.-C., Barriot, R., Yan, J., Moreau, Y., Hassan, B., Quan, X.-J. (2009). Integrating Computational Biology and Forward Genetics in Drosophila, PLoS Genet., 5(1):e1000351.
- 2008 Jan Tranchevent*, L.-C., Barriot*, R., Shi, Y., Van Loo, P., De Moor, B., Aerts, S., Moreau, Y. (2008) Endeavour update: a web resource for gene prioritization in multiple species. Nucleic Acids Research WebServer Issue, Vol. 36, No. suppl_2, W377-384 (* joint first author)
- 2008 Jan De Preter*, K., Barriot*, R., Speleman, F., Vandesompele, J., Moreau, Y. (2008) Positional gene enrichment analysis of gene sets for high resolution identification of overrepresented chromosomal regions. Nucleic Acids Research 36(7):e43
- 2007 Jan Mortier-Barriere I, Velten M, Dupaigne P, Mirouze N, Pietrement O, McGovern S, Fichant G, Martin B, Noirot P, Le Cam E, Polard P, Claverys JP. (2007) A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA. Cell. 130(5), 824-36.
- 2007 Jan Fremez R, Faraut T, Fichant G, Gouzy J, Quentin Y. (2007) Phylogenetic exploration of bacterial genomic rearrangements. Bioinformatics. 23(9), 1172-4.
- 2007 Jan Louarn JM, Quentin Y. (2007) FtsK controls metastable recombination provoked by an extra Ter site in the Escherichia coli chromosome terminus. Mol Microbiol. 64(1), 207-19.
- 2006 Jan Knutsen E, Johnsborg O, Quentin Y, Claverys JP, Havarstein LS. (2006) BOX elements modulate gene expression in Streptococcus pneumoniae: impact on the fine-tuning of competence development. J Bacteriol. 188(23), 8307-12.
- 2006 Jan Martin, B., Quentin, Y., Fichant, G. and Claverys, J.-P. (2006) Independent evolution of competence regulatory cascades in streptococci ?. Trends Microbiol. 14(8), 339-45.
- 2006 Jan Fichant, G., Basse, M.-J., and Quentin, Y. (2006) ABCdb: an online resource for ABC transporter repertories from sequenced archaeal and bacterial genomes. FEMS Microbiol Lett . 256(2), 333-9.
- 2005 Jan Capponi, C., Fichant, G., Quentin, Y. and Denis, F. (2005) Classification of domains with boosted Blast. In proceedings of International Symposium on Applied Stochastic Models and Data Analysis.
- 2005 Jan Chabalier, J., Capponi, C., Quentin, Y., and Fichant, G. (2005) ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems. Bioinformatics, 21(7), 1246-1256, [Epub ahead of print 2004 Nov 5].
- 2002 Jan Joseph, P., Fichant, G., Quentin, Y., and Denizot, F. (2002) Regulatory relationship of two-component and ABC transport systems and clustering of their genes in the Bacillus/Clostridium group, suggest a functional link between them. J. Mol. Microbiol . Biotechnol. 4 , 503-513 .
- 2002 Jan Quentin, Y., Chabalier, J. and Fichant, G. (2002) Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes. Computers and Chemistry, 26, 447-457
- 2001 Jan Capponi, C., Chabalier, J., Quentin, Y. and Fichant, G. (2001) A Knowledge Base for Integrated Biological Systems. IEEE Intelligent Systems, 16(6), 52-60.
- 1999 Jan Quentin, Y., Fichant, G. and Denizot, F. (1999). Inventory, assembly and analysis of Bacillus subtilis ABC transport systems. J. Mol. Biol. 287, 467-484.
