Publications
Publications de l'équipe RNARCHAEA (Clouet-d'Orval)
- Hadjeras L, Bouvier M, Canal I, Poljak L, Morin-Ogier Q, Froment C, Burlet-Schlitz O, Hamouche L, Girbal L, Cocaign-Bousquet M, Carpousis AJ..
Attachment of the RNA degradosome to the bacterial inner cytoplasmic membrane prevents wasteful degradation of rRNA in ribosome assembly intermediates
PLoS Biology
2023 Jan - Gaëlle Hogrel1,a, Sébastien Laurent2,3, Ziad Ibrahim1,b, Jacques Covès1, Eric Girard1, Frank Gabel1, Clarisse Etienne4, Marie-Claire Daugeron5, Béatrice Clouet-d’Orval4, Tamara Basta5, Didier Flament2,3, Bruno Franzetti1,*.
Characterization of a small tRNA-binding protein that interacts with the archaeal proteasome complex
Mol Microbiol . 2022 Jul;118(1-2):16-29. doi: 10.1111/mmi.14948. Epub 2022 Jun 15.
2022 Jul - Hajj M, Langendijk-Genevaux P, Batista M, Quentin Y, Laurent S, Capeyrou R, Abdel-Razzak Z, Flament D, Chamieh H, Fichant G, Clouet-d'Orval B, Bouvier M..
Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase
Biomolecules
2021 Jun - D.K. Phung, C. Etienne, M. Batista, P. Langendijk-Genevaux, Y. Moalic, S. Laurent, S. Liuu, V. Morales, M. Jebbar, G. Fichant, M. Bouvier, D. Flament, B. Clouet-d’Orval.
RNA processing machineries in Archaea: the 5′-3′ exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3′-5′ exoribonucleolytic RNA exosome machinery
Nucleic Acids Research
2020 Feb - Manon Batista1, Petra Langendijk-Genevaux1, Mirna Hajj1,Duy Khanh Phung2, Laura Plassart3, Marie Bouvier1, Gwennaële Fichant1, and Béatrice Clouet-d’Orval1*.
The Archaeal Specific Helicase of the Ski2-like family, ASH-Ski2, is an authentic RNA helicase
2019 Dec en préparation - Hajj M., El-Hamaoui, S. Batista M.,Bouvier M., Abdel-Razzak, Z, Clouet-D’Orval, B*., and Chamieh, H.
Archaeal SF1 and SF2 helicases: Unwinding in the extreme
Helicases from all domains of life edited by Dr. Tutejah, Acadamic Press Elsevier,
2018 Dec Chap 1 pp 1-17 ISBN: 978-0-12-814685-9 - Hogrel G., Lu Y., Laurent S., Henry E., Phung DK., Bossé A., Pluchon P. F., Clouet-d’Orval B. and Flament D. .
Physical and functional interplay between PCNA DNA clamp and Mre11–Rad50 complex from the archaeon Pyrococcus furiosus
Nucleic Acids Research,
2018 May vol 46 pp 5651-5663-doi: 10.1093/nar/gky322 - Clouet-d'Orval B*, Batista M, Bouvier M, Quentin Y, Fichant G, Marchfelder A, Maier LK.
Insights into RNA processing pathways and associated-RNA degrading enzymes in Archaea.
FEMS Microbiol Rev.
2018 Apr DOI:10.1093/femsre/fuy016 - Tomkuviene M, Ličytė J. , Olendraitė I; Clouet-d’Orval B, and Klimašauskas S .
Archaeal fibrillarin-Nop5 heterodimer 2'-O-methylates RNA independently of the C/D guide RNP particle
RNA
2017 Aug 23(9):1329-1337. doi: 10.1261/rna.059832 - Phung DK, Bouvier M., Clouet-d’Orval B*.
An overview of ribonuclease repertoire and RNA processing pathways in archaea
Nucleic Acids and Molecular Biology, Clouet-d’Orval B (ed.) – Springer International Publishing (A.W. Nicholson)
2017 May vol 32 Chap 4 pp 89-114, doi 10.1007/978-3-319-65795 - Clouet-d'Orval B*, Phung DK, Langendijk-Genevaux PS, Quentin Y.
Universal RNA-degrading enzymes in Archaea: Prevalence, activities and functions of β-CASP ribonucleases.
Biochimie
2015 Nov 118:278–285 doi:10.1016/j.biochi.2015.05.021. - Phung DK & Clouet-d’Orval B*.
Tips and Tricks to Probe the RNA-Degrading Activities of Hyperthermophilic Archaeal β-CASP Ribonucleases
RNA Remodeling Proteins: Methods and Protocols, Methods in Molecular Biology, Marc Boudvillain (ed.),
2015 Apr vol. 1259, (doi: 10.1007/978-1-4939-2214-7_26 - Dominski Z, Carpousis AJ, Clouet-d’Orval B*.
Emergence of the β-CASP ribonucleases: highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation
Biochim Biophys Acta.
2013 Jul 1829(6-7):532–551 - Phung DK, Rinaldi D, Langendijk-Genevaux PS, Quentin Y, Carpousis AJ, Clouet-d'Orval B*.
Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor.
Nucleic Acids Res.
2013 Jan 41(2):1091-103. - Tomkuviene M, Clouet-d'Orval B, Cerniauskas I, Weinhold E, Klimasauskas S.
Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases
Nucleic Acids Res
2012 Mar (14):6765-73. (doi 10.1093/nar/gks381) - Norais C, Moisan A, Gaspin C, Clouet-d'Orval B*.
Diversity of CRISPR systems in the euryarchaeal Pyrococcales
RNA Biology
2011 May 10(5):659-70 (doi: 10.4161/rna.23927) - Phok K, Moisan A, Rinaldi D, Brucato N, Carpousis AJ and Clouet-d’Orval B*.
Identification of CRISPR and riboswitch related RNAs among novel non-coding RNAs of the euryarchaeon Pyrococcus abyssi
BMC Genomics
2011 Apr 12: 312-327 (doi: 10.1186/1471-2164-12-312) - Clouet-d'Orval, B*, Rinaldi, D, Quentin, Y and Carpousis, A.J. .
Euryarchaeal beta-CASP proteins with homology to bacterial RNase J Have 5'- to 3'-exoribonuclease activity.
J Biol Chem
2010 Jan 285, 17574-17583. - Nolivos S, Carpousis AJ, Clouet-d'Orval B*.
The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn
Nucleic Acids Res.
2005 Nov 33(20):6507-14 - Clouet-d'Orval B*, Gaspin C, Mougin A.
Two different mechanisms for tRNA ribose methylation in Archaea: a short survey.
Biochimie.
2005 Jul 87(9-10):889-95 - Bortolin ML, Bachellerie JP and Clouet-d’Orval B*.
In vitro RNP assembly and methylation guide activity of an unusual box C/D RNA, cis-acting archaeal pre-tRNATrp
Nucleic Acids Res.
2003 Oct 31(22):6524-35 - • Tang TH, Rozhdestvensky TS, Clouet d'Orval B., Bortolin ML, Huber H, Charpentier B, Branlant C, Bachellerie JP, Brosius J, Huttenhofer A.
RNomics in Archaea reveals a further link between splicing of Archaeal introns and rRNA processing.
Nucleic Acids Res.
2002 Nov 30(4):921-30 - Clouet d'Orval B, Bortolin ML, Gaspin C, Bachellerie JP .
Box C/D RNA guides for the ribose methylation of Archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp.
Nucleic Acids Res.
2001 May 29(22):4518-29.
